PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_01224-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 299aa    MW: 32265.4 Da    PI: 7.8184
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_01224-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.22.9e-08103169555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...................TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkas................kapskKlsKaeiLekAveYIksLq 55 
                      h ++Er+RR+++   f  L +++P  +                  + +  +K++ L  A++Y+k+L+
  TRIUR3_01224-P1 103 HVIAERKRREKLQRQFVSLATIVPAGVrkvpplflfssflrsnFIKLGHADKISLLGSAIDYVKQLE 169
                      899**********************888*************996677789***************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.198168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-11102178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.56E-5103173No hitNo description
SuperFamilySSF474596.8E-10103183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-6103169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-6104174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.596231299IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
EEELAYMYQQ EEPLPDHQGQ YYTSFYPCRS SNSPSFGGES LNELGQPYPA LSPSANFLSF  60
AAAEASTHNF SGGSYGGLQV QGTRQQLQAP ARRGRATASA HEHVIAERKR REKLQRQFVS  120
LATIVPAGVR KVPPLFLFSS FLRSNFIKLG HADKISLLGS AIDYVKQLEE KVKALGEQGL  180
LKSPECTLFE SKCSISAADK DDSAGPSGSG SSSGDSSPVD VEASTRGNTV LLKICCKERR  240
GVLVMVLSEL ENQGLSIITT NVLPFTDSCL NITITAKATG FSSAVELVKN LKMALRSFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106111ERKRRE
2107112RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2264073e-43AC226407.1 Oryza minuta clone OM__Ba0018H10, complete sequence.
GenBankAC2264083e-43AC226408.1 Oryza minuta clone OM__Ba0085I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230206.14e-95PREDICTED: transcription factor bHLH18-like isoform X1
RefseqXP_014752081.13e-95PREDICTED: transcription factor bHLH18-like isoform X2
TrEMBLT1L9S20.0T1L9S2_TRIUA; Uncharacterized protein
STRINGBRADI1G69110.11e-97(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64013149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.16e-24bHLH family protein